PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT45578.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17901.5 Da    PI: 5.6922
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT45578.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.78.3e-106282244
                HHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF 22 KKAeELSvLCdaevaviifsstg 44
                KKA+EL +LCd++v +iif+s+ 
  PHT45578.1  6 KKAQELATLCDVQVGIIIFGSEE 28
                9*******************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    
MTSFSKKAQE LATLCDVQVG IIIFGSEEMI LWPSEPHVKQ IVERYFSFPE LERMNKLVRN  60
VEYHEKMVED QKESITKIEQ KNEEKKMELL FNEVVKGKNI YELDVGELRG LTKLFALKKA  120
QVEERKKQLH EHNQSIEGSD NNAQEKDDGH PKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.13e-10M-type_MADS family protein