PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT45628.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20607.5 Da    PI: 9.7717
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT45628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF405e-131563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ie k  r  +fskRr+g+ KKA+EL    d+++ +i+fs+ gk + +
  PHT45628.1 15 KKIEKKEDRFASFSKRRAGLYKKASELVAEFDVDIGIIMFSPGGKPHSF 63
                689*****************************************98776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    
MVNKKSKGRQ KIPMKKIEKK EDRFASFSKR RAGLYKKASE LVAEFDVDIG IIMFSPGGKP  60
HSFFHPTVDA IVSRFQNPDV QLSESTHLVA AYARKRVNQL ESRLEEFDIR EKAAITLTNQ  120
LDQMAKSRQK GWWESIEQLN ADEVAKFEAW LNATTFNMHN RLNQLENEAT ISLGCESFGV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.14e-27M-type_MADS family protein