PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45638.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 548aa MW: 60894.4 Da PI: 7.1416

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.3	1.5e-33	209	266	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k PHT45638.1 209 DDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSL-DGQITEIVYKGNHNHPK 266 8**************************************.*************85 PP
2	WRKY	106.6	1.3e-33	381	439	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts+gCpv+k+ver+++d + v++tYeg+Hnh+ PHT45638.1 381 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPGCPVRKHVERASQDIRSVITTYEGKHNHD 439 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 548 aa Download sequence
MAASSFSFPT SSSFMTTSFT DLLASSDDYP ITKGLGDRIA ERTGSGVPKF KSLPPPSLPL 60 SPPPFSPSSY FAIPPGLSPT ELLDSPVLLS SSNVLPSPTT GSFPAQAFNW KSSSNNQDVK 120 QEEKNYSDFS FQTQVGTAAS ISQTQTSHVS LGQQAWNYQE PTKQDGLSSD QNANGRSEFN 180 TMQSFMQNND HSNSGNGYNQ SIREQKRSDD GYNWRKYGQK QVKGSENPRS YYKCTYPNCP 240 TKKKVERSLD GQITEIVYKG NHNHPKPQAT RRSSSSTASS AIQSYNTQTN EIPDHQSYGS 300 NGTGQIDSVA TPENSSISFG DDDHEHTSQK SRSRGDDLDE EEPDSKRWKR ESESEGLSAL 360 GSRTVREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTSP GCPVRKHVER 420 ASQDIRSVIT TYEGKHNHDV PAARGSGNHS INRPIAPTIT NNNSAMAIRP SVTSHQSNYQ 480 VPMQSIRPQQ FEMRAPFTLE MLQKPNNYGF SGYANSEDSY ENQLQDNNGF SRAKNEPRDD 540 MFMESLLC

Sequence ? help Back to Top

Protein Sequence Length: 548 aa Download sequence

MAASSFSFPT SSSFMTTSFT DLLASSDDYP ITKGLGDRIA ERTGSGVPKF KSLPPPSLPL  60
SPPPFSPSSY FAIPPGLSPT ELLDSPVLLS SSNVLPSPTT GSFPAQAFNW KSSSNNQDVK  120
QEEKNYSDFS FQTQVGTAAS ISQTQTSHVS LGQQAWNYQE PTKQDGLSSD QNANGRSEFN  180
TMQSFMQNND HSNSGNGYNQ SIREQKRSDD GYNWRKYGQK QVKGSENPRS YYKCTYPNCP  240
TKKKVERSLD GQITEIVYKG NHNHPKPQAT RRSSSSTASS AIQSYNTQTN EIPDHQSYGS  300
NGTGQIDSVA TPENSSISFG DDDHEHTSQK SRSRGDDLDE EEPDSKRWKR ESESEGLSAL  360
GSRTVREPRV VVQTTSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTSP GCPVRKHVER  420
ASQDIRSVIT TYEGKHNHDV PAARGSGNHS INRPIAPTIT NNNSAMAIRP SVTSHQSNYQ  480
VPMQSIRPQQ FEMRAPFTLE MLQKPNNYGF SGYANSEDSY ENQLQDNNGF SRAKNEPRDD  540
MFMESLLC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-113	WRKY family protein