PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT45647.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 203aa    MW: 22456.5 Da    PI: 6.8852
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT45647.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.63.7e-42391381100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++
  PHT45647.1  39 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTIAHRVFGASNIIKFLQELPEYQRADAVSSMVYEANARMRDPVYGSAGAICQLQKQVNELQAQLAKTQA 137
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  PHT45647.1 138 E 138
                 7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MESSNTAINS LITTTTPPSP DSVSPPCNSP SPPRVVVTPC AACKILRRRC AEKCVLAPYF  60
PPNDPIKFTI AHRVFGASNI IKFLQELPEY QRADAVSSMV YEANARMRDP VYGSAGAICQ  120
LQKQVNELQA QLAKTQAELV TMQCQHANLM AYVYVEMGQS PPTSPQQSLD KFTNSTTHST  180
FHNNINFLDE NNNYGTLLET LWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-67LBD family protein