PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45668.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 286aa MW: 31740.1 Da PI: 8.8128

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45668.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl PHT45668.1 14 KGAWTKEEDQRLISYIRAHGEGCWRSLPKAAGLSRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	58.9	1.1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W+ Ia +++ gRt++++k++w+++ PHT45668.1 67 RGNFTEEEDELIIKLHSLLGNK-WSVIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MGRSPCCEKA HTNKGAWTKE EDQRLISYIR AHGEGCWRSL PKAAGLSRCG KSCRLRWINY 60 LRPDLKRGNF TEEEDELIIK LHSLLGNKWS VIAGRLPGRT DNEIKNYWNT HIKRKLISRG 120 IDPQTHRSLN ATATISTTTA ITTTIPTTTT TTTKNINMDF ENIDQKPNII IATSSSYDET 180 KCSSGTTEET KPLDIIPKIP SSQVMINLEL SIGLPFHTDH ISSAESTASY NFLATVAPPP 240 TVAVPVAATA SETVAKTVCL CWQIGYQGGT QYCGKCKNTT GFYRYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	2e-89	MYB family protein