PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT45851.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 467aa    MW: 54025.3 Da    PI: 9.3334
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT45851.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.11e-05442463426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 ++Crf+a+ G C yG +Ck+ H+
  PHT45851.1 442 KPCRFYAQ-GRCYYGHSCKYLHD 463
                 79******.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    
MDWVDSDSSD YDSDDDPTFD LLEEETRSTL SKLSIKKHNS SKDMSARRNV SKALEESVEE  60
EQDEDKTDPK LGEKDQRSYE TIQKTIKAGQ IEKLKVEQCK IYLRKHALRL TGSKDTLIQR  120
IKEHTEYFPD FSLFRFSIAS RSATGPPCGT RIVAGRIVKE SYGAKKQQHT FTVEVLWSKG  180
EKPLPPLHPL LIKGRNLYRL KTLRQKWDDE AERLKILSEK HARGSVARSN RETRVQEKEM  240
HKLQRENRVS TGYKEKKSVA EKQLHSLSMN SVNKKDQPQV EVVDNSQKDE QKECRKFTNV  300
IQENVFPNQR QPLTNVNLND PSSYRERQQG FGESYTSNPS KIPLRVYNSN MHMPIWRGSS  360
YGGNTNNYNS LSRMHDSNAH NIPTYSDGGY NNCNTSRSPL HEHGHMYTYG HSQNMNWQAR  420
NGWCNAGAAK RPFQGQCEEQ KKPCRFYAQG RCYYGHSCKY LHDSVEI