PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT45975.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YC

Protein Properties

Length: 244aa MW: 26390.5 Da PI: 5.2493

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT45975.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	178.5	6.3e-56	52	156	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie+a+dfknh+lPlar+kki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdiv PHT45975.1 52 QLQMFWNYQrqeIEQANDFKNHQLPLARVKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIV 150 89***998899********************************************************************************** PP NF-YC 97 prdelk 102 prde+k PHT45975.1 151 PRDEVK 156 *875 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MDNNTNTHQS PTDASAAAAA AAAATAAQSA SAVAAYPGQT PYHHLLQQQQ QQLQMFWNYQ 60 RQEIEQANDF KNHQLPLARV KKIMKADEDV RMISAEAPVL FAKACELFIL ELTIRSWLHA 120 EENKRRTLQK NDIAAAITRT DIFDFLVDIV PRDEVKDEGV GLGLGPGIVG PTASGVPYYY 180 PPLGQPAPGG VMLGRPAVPG VDPSMYVHPP PSQAWQSVWQ TSEEHSYPSG GGSSSGQGNV 240 DGQM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	125	131	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	2e-96	NF-YC family protein