PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46028.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 434aa MW: 49290 Da PI: 8.5808

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46028.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	333	353	1	19
EEET..TTTEEESSHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrH 19 ++C+ C+ sF+++ Lk+H PHT46028.1 333 HTCNarQCTLSFPDPKALKKH 353 799999*************** PP

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence
MINCNVAATP MNINEKLCRD DGSEMANAAY FRILVGDLNY LSHIRPDIAF SVGVVSRFMH 60 NPSKLHLGAA KRILRCIVET LEHEIWYSKF YEQPGDYEFK PWKSLLQNVS QSRIAHSRSF 120 SAQGCPLYEV INNLKVMGSS RGNSLLQKCE VRRSLGKKEQ KGSTGMTEKL KASNFPGLVL 180 RIGSWERSRY EGDLVAKCYF AKHKLVWEVL DGVLKNKIEF QWSDIVGLKA NCPDDAPRTL 240 DVVLSRQPLF FRETNPQPRK HTLWQATSDF TDGQASTHRL GKHFEKLVQC DPRLNFLSQQ 300 AEIKLESRIN RNKTKSQNNL VELGERVLRK SDHTCNARQC TLSFPDPKAL KKHVPEKHVE 360 EFECVCHYCG VGLKNHDDLQ VSSQGSSIKL TPAGGGLSWQ SYNEEIPTVD DSDTLTANGL 420 WEQKNITRDS SDYL

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence

MINCNVAATP MNINEKLCRD DGSEMANAAY FRILVGDLNY LSHIRPDIAF SVGVVSRFMH  60
NPSKLHLGAA KRILRCIVET LEHEIWYSKF YEQPGDYEFK PWKSLLQNVS QSRIAHSRSF  120
SAQGCPLYEV INNLKVMGSS RGNSLLQKCE VRRSLGKKEQ KGSTGMTEKL KASNFPGLVL  180
RIGSWERSRY EGDLVAKCYF AKHKLVWEVL DGVLKNKIEF QWSDIVGLKA NCPDDAPRTL  240
DVVLSRQPLF FRETNPQPRK HTLWQATSDF TDGQASTHRL GKHFEKLVQC DPRLNFLSQQ  300
AEIKLESRIN RNKTKSQNNL VELGERVLRK SDHTCNARQC TLSFPDPKAL KKHVPEKHVE  360
EFECVCHYCG VGLKNHDDLQ VSSQGSSIKL TPAGGGLSWQ SYNEEIPTVD DSDTLTANGL  420
WEQKNITRDS SDYL