PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46180.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 310aa MW: 33558.5 Da PI: 5.594

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.4e-38	30	89	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprC s ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk+k++ PHT46180.1 30 NHQALKCPRCGSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKSKRA 89 57899****************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MQDIHPIGGG GGRFYGGGGD RRLRPNNHQN HQALKCPRCG SLNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGVLRNVPVG GGCRKSKRAK LKSSSINAVA EVAEAQEEQK SDTNSSTDSS 120 SLTATTTAAT AAAAVAEATA TGNTSGGATT EDVSATSSNS ASTYLNFPDS SNFFIPHSTT 180 NNHQTFDDQP LTENFSSMMT SSNDPSMVGF NIAEIPAYRL PENQSSMIET LPSGDLKMEQ 240 TGTGYLNQTD RVEFPGLQQN RIDNSELASL DWQTGGGGDH GLYDLTGTVD QSYWNQTQWG 300 ENDNSLNFLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	19	GGGGRFYGGGG
2	10	20	GGGGRFYGGGG
3	11	21	GGGGRFYGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-33	Dof family protein