PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT46185.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 29047.7 Da    PI: 9.302
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT46185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.31.2e-29958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey+
  PHT46185.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYA 58
                79***********************************************8 PP
2K-box102.65.2e-348517510100
       K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +++   s++ e+akLk+++e Lqr+q+h+ Ge+L+sL++keLq+Le+qL+++lk+iRs+Kn+l++e+i+ lqkk k+lqe+n++L+kk++e
  PHT46185.1  85 DHTSPGSWTLEHAKLKARLEVLQRNQKHYAGEELDSLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDKALQEQNNQLSKKVKE 175
                 4556679*********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYAND  60
SCMERILERY ERYSYAERQL VPNDDHTSPG SWTLEHAKLK ARLEVLQRNQ KHYAGEELDS  120
LNMKELQNLE HQLDSALKHI RSRKNQLMHE SISVLQKKDK ALQEQNNQLS KKVKEREKEL  180
VQQNNWDQQN NEISSSSFVL PQQLDSSLPR EAYQNTAGVD NGEVEGANSQ QQQQAAPNTV  240
MPQWMLRHLN G
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-107MIKC_MADS family protein