PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46230.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 373aa MW: 41283.8 Da PI: 6.0068

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.1	1.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W+ I+ g+ R+ k+c++rw +yl PHT46230.1 14 KGPWTPEEDIILVSYIQEHGPGNWRNIPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.3	1.1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l PHT46230.1 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKKV 120 ESHGNDAHDH ENNHQEGAST SSSSSQSRIS KGQWERRLQT DIHTAKQALC EALSLDTSPN 180 KTIPINPEEQ QQQQQPAVQA SMTYASSAEN IAKLLQNWMK NSPNSTSSSS SKITQQMSLN 240 NNLSVGALSS SSPSEGTVNV APAQGLDSLF SFNSSNNSDV SQSVSIDESG NLISTPENNN 300 AGIFQVESKP ILPDFKPESG IHQEESKQNL ETQVPLTLLE KWLLDDANAQ AEQEDQLMGI 360 GMGMAMSETA DLF

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRPPCCEKT GVKKGPWTPE EDIILVSYIQ EHGPGNWRNI PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLNKKV  120
ESHGNDAHDH ENNHQEGAST SSSSSQSRIS KGQWERRLQT DIHTAKQALC EALSLDTSPN  180
KTIPINPEEQ QQQQQPAVQA SMTYASSAEN IAKLLQNWMK NSPNSTSSSS SKITQQMSLN  240
NNLSVGALSS SSPSEGTVNV APAQGLDSLF SFNSSNNSDV SQSVSIDESG NLISTPENNN  300
AGIFQVESKP ILPDFKPESG IHQEESKQNL ETQVPLTLLE KWLLDDANAQ AEQEDQLMGI  360
GMGMAMSETA DLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	2e-99	MYB family protein