PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46269.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 676aa MW: 75820.7 Da PI: 10.1895

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46269.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	47.6	3e-15	365	411	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN ++ L++l+P+a K +Ka++Le++++Y+k+Lq PHT46269.1 365 IHNQSERRRRDRINGKMKALQKLVPNA-----SKTDKASMLEEVIRYLKQLQ 411 5***********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MKRNIYDLGD GEFAAAIAAS AFAICSIEEN AGSQYQIKTR GPVIRPAETA PMRRPTTVNR 60 KNSAEIVTIN PSASDKMQKG ISRGSRNAEN KADAWEKIQI AKIRKRHGEL LSSLIAWENE 120 KKMMAKQQME RRKNQLELAM KRNLQHYKNK LARIDHIAKE ARTQAEEKRR YEESIVREKS 180 NKIRSTGTGP VTCGPFLPGD GPIQSGKCEV AELTWENGQV AMHRLGSNLP NEQAKHTWGK 240 ACDTLESIVH QATFQKQNHS SKLMGISDGH NSQANIDREK NASYGGQQTR GVLKRMRSDS 300 DPQLYGGGRS VELISARANA NDNDITMVTW PCNEDSDCHG GSENKEEERE TKSSNLLKRS 360 RRAAIHNQSE RRRRDRINGK MKALQKLVPN ASKTDKASML EEVIRYLKQL QAQVQLITSA 420 RNMEQQMMMM SLGMQPHIQM PLLARMGMDS TAGMLNNMTA NLPRAPYHSL TAAPLFYPTS 480 SIPTLCPPFM SPSFAMTSSI PNGDAVSSAA APNVATTSVP FNHPYSAFLP QSMKMEFNNE 540 MASQYQSMQT RNSKMEQSIG SRVLMVSKVP KKLIKWWGML NYSERHEIEK LLSNLTSLLN 600 ITPRPDLIEA ASTFWDSDSL VFRFGACEMM PTLAEISGLF HLPYIGKKLI LARNYSRRRF 660 LELCGLKANE HLGSLK

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MKRNIYDLGD GEFAAAIAAS AFAICSIEEN AGSQYQIKTR GPVIRPAETA PMRRPTTVNR  60
KNSAEIVTIN PSASDKMQKG ISRGSRNAEN KADAWEKIQI AKIRKRHGEL LSSLIAWENE  120
KKMMAKQQME RRKNQLELAM KRNLQHYKNK LARIDHIAKE ARTQAEEKRR YEESIVREKS  180
NKIRSTGTGP VTCGPFLPGD GPIQSGKCEV AELTWENGQV AMHRLGSNLP NEQAKHTWGK  240
ACDTLESIVH QATFQKQNHS SKLMGISDGH NSQANIDREK NASYGGQQTR GVLKRMRSDS  300
DPQLYGGGRS VELISARANA NDNDITMVTW PCNEDSDCHG GSENKEEERE TKSSNLLKRS  360
RRAAIHNQSE RRRRDRINGK MKALQKLVPN ASKTDKASML EEVIRYLKQL QAQVQLITSA  420
RNMEQQMMMM SLGMQPHIQM PLLARMGMDS TAGMLNNMTA NLPRAPYHSL TAAPLFYPTS  480
SIPTLCPPFM SPSFAMTSSI PNGDAVSSAA APNVATTSVP FNHPYSAFLP QSMKMEFNNE  540
MASQYQSMQT RNSKMEQSIG SRVLMVSKVP KKLIKWWGML NYSERHEIEK LLSNLTSLLN  600
ITPRPDLIEA ASTFWDSDSL VFRFGACEMM PTLAEISGLF HLPYIGKKLI LARNYSRRRF  660
LELCGLKANE HLGSLK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	362	374	RAAIHNQSERRRR
2	370	375	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-38	bHLH family protein