PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46366.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 574aa MW: 64121.4 Da PI: 4.9209

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.2	1.1e-12	252	274	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG CkyG +CkF+H+ PHT46366.1 252 EDCAYYMKTGACKYGVNCKFNHP 274 89********************8 PP
2	zf-CCCH	22.1	2.7e-07	281	300	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +++ G CkyG++Ck++H++ PHT46366.1 281 YYLTEGGCKYGNTCKYNHSR 300 89****************95 PP
3	zf-CCCH	40.5	4.4e-13	321	345	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++rtG CkyG++C+F+H+ PHT46366.1 321 GEKDCPYYMRTGSCKYGSNCRFHHP 345 7889********************9 PP
4	zf-CCCH	27.5	5.4e-09	458	484	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +tG Cky ++CkF+H++ PHT46366.1 458 PGQPDCSYFIKTGDCKYKANCKFHHPK 484 5789*********************96 PP
5	zf-CCCH	31.6	2.7e-10	504	530	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f++r+G+Ck+G+ CkF H++ PHT46366.1 504 PGQPVCSFYSRYGICKFGPGCKFDHPE 530 5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MEGIESQVYM QHQPTTLDKH YLGFHHPQPP DGTSSFSSEQ DLRSPEENEV DDELLLPIIV 60 EEVRDLVLNQ AVSEERPKSE AVAAKSAKPV NEEEVAVQII NEELRKLVLN QSFSEERARE 120 GDINESEGGE AGSKEWGADQ YEDGDCSWRE HENVVGGEDE KGSEAGSKKW GVDHYEDGDY 180 SWSEDANVID VENEEGLKEW GFNCYEDGDH SWRRNENVVD VENEKDGEAG SKLWGYNANG 240 RGLIYPLRPD AEDCAYYMKT GACKYGVNCK FNHPSPRQNQ YYLTEGGCKY GNTCKYNHSR 300 RKDALSPVLD YNFLGLPIRP GEKDCPYYMR TGSCKYGSNC RFHHPDPTTA AGNNRSFGYN 360 NSGSAPVQSA SYSPVSSWSS PRASNETSPF LPVVYTTSKG IPPPGPQWNS FLTTVCPTLE 420 KSLPTPPAFT MDDPATKTNF YPRPQQPWLV EEYYPERPGQ PDCSYFIKTG DCKYKANCKF 480 HHPKTQNFKT NLSILSNKGL PLRPGQPVCS FYSRYGICKF GPGCKFDHPE NNGNAASPPA 540 FGFYQPPFGN SATTDGSRMA RKGNGNGSLV HQSF

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MEGIESQVYM QHQPTTLDKH YLGFHHPQPP DGTSSFSSEQ DLRSPEENEV DDELLLPIIV  60
EEVRDLVLNQ AVSEERPKSE AVAAKSAKPV NEEEVAVQII NEELRKLVLN QSFSEERARE  120
GDINESEGGE AGSKEWGADQ YEDGDCSWRE HENVVGGEDE KGSEAGSKKW GVDHYEDGDY  180
SWSEDANVID VENEEGLKEW GFNCYEDGDH SWRRNENVVD VENEKDGEAG SKLWGYNANG  240
RGLIYPLRPD AEDCAYYMKT GACKYGVNCK FNHPSPRQNQ YYLTEGGCKY GNTCKYNHSR  300
RKDALSPVLD YNFLGLPIRP GEKDCPYYMR TGSCKYGSNC RFHHPDPTTA AGNNRSFGYN  360
NSGSAPVQSA SYSPVSSWSS PRASNETSPF LPVVYTTSKG IPPPGPQWNS FLTTVCPTLE  420
KSLPTPPAFT MDDPATKTNF YPRPQQPWLV EEYYPERPGQ PDCSYFIKTG DCKYKANCKF  480
HHPKTQNFKT NLSILSNKGL PLRPGQPVCS FYSRYGICKF GPGCKFDHPE NNGNAASPPA  540
FGFYQPPFGN SATTDGSRMA RKGNGNGSLV HQSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-90	C3H family protein