PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT46454.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family YABBY
Protein Properties Length: 191aa    MW: 21241 Da    PI: 8.5966
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT46454.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY234.72.2e-7281644170
       YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102
                  ss e+vCyv+CnfCntilavsvP +s++++vtvrCGhC +llsvn+  + q l+ ++  +      + +++ + e+  + + ++++s++++++ + + 
  PHT46454.1   8 SSSLERVCYVHCNFCNTILAVSVPCNSMMTIVTVRCGHCGNLLSVNIGPSIQSLPLQDL-Q------QRQDQSSIEDGSRGYGSSSSSTNSYHRFSPI- 98 
                 57789***************************************************995.3......3334444444445555555555566666554. PP

       YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                   +d ++pr pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  PHT46454.1  99 -PTDPDLPRSPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 164
                 .456789*9999.9****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    
MSLDMTYSSS LERVCYVHCN FCNTILAVSV PCNSMMTIVT VRCGHCGNLL SVNIGPSIQS  60
LPLQDLQQRQ DQSSIEDGSR GYGSSSSSTN SYHRFSPIPT DPDLPRSPPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKASNPD ISHREAFSTA AKNWAHFPHI HFGLKLDGNK QTNKLDHAVA  180
GEAPQKSIGL Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.19e-64YABBY family protein