PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46565.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 251aa MW: 28592.4 Da PI: 4.8601

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46565.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ll++++++ G ++W++ ++ g+ R++k+c++rw +yl PHT46565.1 14 RGPWSKEEDDLLINYINKNGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	50.8	3.8e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE++ +++++++lG++ W+tIa++++ gRt++++k+ w++ PHT46565.1 67 RGNFTNEEEDTIIELHQLLGNR-WSTIAARLP-GRTDNEIKNIWHT 110 89******************.*****.*******9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGRSPCCEKL GLKRGPWSKE EDDLLINYIN KNGHPNWRAL PKLAGLLRCG KSCRLRWTNY 60 LKPDIKRGNF TNEEEDTIIE LHQLLGNRWS TIAARLPGRT DNEIKNIWHT RLKKKISKSQ 120 AQKTPELQEE TSMETSKSDE QNLDTHLGPE NSNFDIHLES DNSKDNSEIS SPKTNSEIQQ 180 QSSSSVHSSS SISSSCEDAC SNTTATSPEP RDQFMLDNLV EIDDDFWSEV LWTTVDDSNY 240 NDNNFDLSKN N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06180.1	3e-74	MYB family protein