PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46747.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 696aa MW: 76474.2 Da PI: 9.7065

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46747.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	597	646	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ PHT46747.1 597 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 646 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MVLQKRLDYG FNGYQVPHIP RATRSARRRG IIRRKADGDG TCPFDLLATV AGKLLGEEGE 60 SSPDSTGSVR GKEQGAIVKG EKVKEDEDRS LKEKSYTEGC YERGFFISEL VSQAPVVNRS 120 LSELPHVQNA TISGPASVTM SSDCAEKFPF AKQFVNGESS GQNGNISSKT EREASGCGVF 180 SSCTLDTASD KQMKIELSNS AKVSTYKEAA ISSSKFPDIW DKKPSTLVTS DESVKLSLST 240 YPAPCKSFPL IRNDVKLAKK DDDENSGCTQ PSTPNKASGS APRVRDQPIK KLLASKYREE 300 NLKSDDEDHA NSGRKTMHVY YNRNIGYKHQ RSQRDFPFKK RKVFKCGSFS NSDKEMSTDG 360 ICSSPTDDLH GIASSSSKAS SGGWTAAGTS VFNRGRAILR PGDSHVKFRI KSFRVPELFV 420 DIPENATIGS LKALMEAVTA ILGGGLRIGV VFQGKKVRDD NKTLLQTGIS HDYKLDALGF 480 SLEPNPVQTS QPLGADCRSC VLPYETPQLL TSRCPSPGTV VHTGIQQGRS DDHTGTSLSN 540 FLESDHDSAP SPHYAALEKI SANSRALVPL TAVNAEALSV VPLRKPKRSE ATQRRIRRPF 600 SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE 660 PVPQELLDRV LTAHAYWSQQ QAKQQMKQPS ETYLLL

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MVLQKRLDYG FNGYQVPHIP RATRSARRRG IIRRKADGDG TCPFDLLATV AGKLLGEEGE  60
SSPDSTGSVR GKEQGAIVKG EKVKEDEDRS LKEKSYTEGC YERGFFISEL VSQAPVVNRS  120
LSELPHVQNA TISGPASVTM SSDCAEKFPF AKQFVNGESS GQNGNISSKT EREASGCGVF  180
SSCTLDTASD KQMKIELSNS AKVSTYKEAA ISSSKFPDIW DKKPSTLVTS DESVKLSLST  240
YPAPCKSFPL IRNDVKLAKK DDDENSGCTQ PSTPNKASGS APRVRDQPIK KLLASKYREE  300
NLKSDDEDHA NSGRKTMHVY YNRNIGYKHQ RSQRDFPFKK RKVFKCGSFS NSDKEMSTDG  360
ICSSPTDDLH GIASSSSKAS SGGWTAAGTS VFNRGRAILR PGDSHVKFRI KSFRVPELFV  420
DIPENATIGS LKALMEAVTA ILGGGLRIGV VFQGKKVRDD NKTLLQTGIS HDYKLDALGF  480
SLEPNPVQTS QPLGADCRSC VLPYETPQLL TSRCPSPGTV VHTGIQQGRS DDHTGTSLSN  540
FLESDHDSAP SPHYAALEKI SANSRALVPL TAVNAEALSV VPLRKPKRSE ATQRRIRRPF  600
SVAEVEALVQ AVEKLGTGRW RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE  660
PVPQELLDRV LTAHAYWSQQ QAKQQMKQPS ETYLLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	342	QRDFPFKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-124	MYB_related family protein