PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46861.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 301aa MW: 34264 Da PI: 7.709

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46861.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.9	7.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ + ++G+g +W + +++ g++R++k+c++rw++yl PHT46861.1 14 RGPWSPEEDAKLKEFIDKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	38.9	2e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ eEd ++ + + G++ W+ Ia+ ++ gRt++++k++w++ PHT46861.1 69 GDFSDEEDRIICSLYANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 679****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MGRAPCCDKN NVKRGPWSPE EDAKLKEFID KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGD FSDEEDRIIC SLYANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGF 120 IHTSSNQRIK SPNLFLPPTT FPPQIQSQAI SNIFKDEYLE PISSLQPNFM YHNNNMNFQL 180 GTNNQYSYFL ESLMNPMQAS CSSSDGSCSQ IPRSNFEETQ KFTLDNYGNN GGTWADHDQK 240 PDGYFGNNYQ NHSSQFQYDT SNIEEVKELI SSSSSNGNGC NNNNNVLFFS DENKANIGYW 300 G

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-78	MYB family protein