PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT46942.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 191aa MW: 21570.5 Da PI: 6.6671

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT46942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.9	2e-39	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+kdC++ p+fp+++p+kf +vh++FGasn++k+l+++p ++reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l++el+++ + PHT46942.1 13 PCAACKLLRRRCTKDCIFLPHFPSAEPHKFIAVHRIFGASNISKMLQEIPMNNREDAVVSMVYEATARLRDPVYGSVGIISALQKHIFHLQSELNEASA 111 7*********************************************************************************************99876 PP DUF260 100 e 100 e PHT46942.1 112 E 112 5 PP

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence
MSCTLSKKNK HMPCAACKLL RRRCTKDCIF LPHFPSAEPH KFIAVHRIFG ASNISKMLQE 60 IPMNNREDAV VSMVYEATAR LRDPVYGSVG IISALQKHIF HLQSELNEAS AEAISLRTQL 120 SDASSLPSSL LEGSPFTPEN HEFHDHYQKP NEQHAYANND SNDLLLLPEA ADYCFQETEI 180 LPLPYLKYGQ Q

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-46	LBD family protein