PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT47040.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 863aa    MW: 94642.4 Da    PI: 6.3159
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT47040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.4e-191573357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PHT47040.1 15 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                5679*****************************************************97 PP
2START171.26.9e-541593672205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++++v+ ++  g+++l +++l
  PHT47040.1 159 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWFRDCRTVDVINVLPTAngGTIELLYMQL 256
                 789*******************************************************.9999999999****************9999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRa  lpSg+li+p+++g+s +++v+h++l++++++++lr+l++s+++ ++
  PHT47040.1 257 YAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVPNFVRADILPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLYESSAVLAQ 355
                 **************************************9999999****************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt+va+l+++++
  PHT47040.1 356 KTTVAALRYLRQ 367
                 *******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 863 aa     Download sequence    
MASCKDGKSV MDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRRQTH  120
STPLATKDTS CESVVTSGQH HLTSQHPPRD ASPAGLLSIA EETLTEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIIAISHGC TGVAARACGL VGLEPTRVSE ILKDRPSWFR DCRTVDVINV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTTVMDDG SLVVCERSLG NTQNGPSMPP  300
VPNFVRADIL PSGYLIRPCE GGGSIIHIVD HMNLEAWSVP EVLRPLYESS AVLAQKTTVA  360
ALRYLRQIAQ EVSQTNVTNW GRRPAALRAL GQRLSRGFNE ALNGLADEGW SMLDSDGMDD  420
VAILVNSSPD KLMGLNLSFA NGFSSMSNAV MCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNIDAYAAAA IKVGPCSLPG ARVGNFGGQV ILPLAHTVEH EEASLLLEVI KLEGHSPEDA  540
IMPRDMFLLQ LCSGMDENAV GTCAELVFAP IDASFADDAP LLPSGFRIIS LESGKEASSP  600
NRTLDLTSAL ETGPAENKVA NDLHTVGGTS RSVMTIAFQF AFESHMQESV ASMARQYVRS  660
IISSVQRVAL ALSPSHLGSH GGLRSPLGTP EAHTLARWIC QSYRNGSPSF SLAWVISVVS  720
ELAIVQLDSC FLGVELLKAN TDQGSESILK GLWHHSDAII CCSAKALPVF TFANQAGLDM  780
LETTLVALQD ITLEKIFDDH GKKNLCTEFP QIMQQGFACL QGGICLSSMS RPISYERAVA  840
WKVMNEEDTA HCICFMFVNW SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein