PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47076.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 817aa MW: 91706.3 Da PI: 7.447

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47076.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.8	5.8e-21	110	165	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t +q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k PHT47076.1 110 RKKYHRHTVQQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 165 7999************************************************9877 PP
2	START	213.5	7.8e-67	284	509	3	206
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 ++a+++l k+a+ +ep+W +s e++n+de++++f++ + +ea+r++g+v+m+l++l+++++d++ qW+e+++ ka+t++vi PHT47076.1 284 VNQAMEQLKKMATCGEPLWIRSFetgrEILNYDEYMKEFPPMEKsgdvkskrMCIEASRETGIVFMELPRLLQTFMDVN-QWKEMFPsmisKAATVDVI 381 57899***************99************98889999999**********************.*************** PP CTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS START 86 ssg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176 ++g ga+qlm+ae q+l+p+v R+++fvRy++q ++g+w ivdvSvd +++ ++s+v++++lpSg+++++ sn h+kvtwveh ++++ + PHT47076.1 382 CNGeganswdGAVQLMFAEVQMLTPVVGtREVYFVRYCKQIRGGQWGIVDVSVDKVEHNI-DASLVKCRKLPSGCILQEQSNAHCKVTWVEHLECQKGI 479 *******************************************************8.9********************************* PP XHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 177 phwllrslvksglaegaktwvatlqrqcek 206 +++l+r++v+sg+a+ga++w+atlq+qce+ PHT47076.1 480 VDSLYRVIVNSGQAFGARRWMATLQQQCER 509 **************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence
MVVVDMSNNP PPPSHETKDF FPSPALSLSL AGIFRDGGGE GNSAGNMETM EEVDDESKGG 60 RPREETSTVE ISSENSEPMR SRGSDDDLEH DDTCNEDKED PNNNSRKKKR KKYHRHTVQQ 120 IREMEALFKE SPHPDEKQRQ QLSKQLGLHP RQVKFWFQNR RTQIKAIQER HENSLLKAEI 180 EKLREENKGL REISKNPTCP NCGFASSSNN DPRVPAEEQQ LRIENARLRA EVEKLRAALG 240 KCPLGASPNS SSSYSGGHDE ENKSALDFYT GIFGLEKSRI MHVVNQAMEQ LKKMATCGEP 300 LWIRSFETGR EILNYDEYMK EFPPMEKSGD VKSKRMCIEA SRETGIVFME LPRLLQTFMD 360 VNQWKEMFPS MISKAATVDV ICNGEGANSW DGAVQLMFAE VQMLTPVVGT REVYFVRYCK 420 QIRGGQWGIV DVSVDKVEHN IDASLVKCRK LPSGCILQEQ SNAHCKVTWV EHLECQKGIV 480 DSLYRVIVNS GQAFGARRWM ATLQQQCERL LFFMATNIPT KDTPGVATLA GRKSILTLAQ 540 RMTWSFYRML GASSYNTWNK VPSKTGQEDI RVASRKNLTD PGEPLGLILC AVSSIWLPVS 600 RNVLFDFLKD ENRRHEWDVM SNGGPVQSVA NLAKGQDKGN AVSIQAVKLR ENMWILQDTC 660 TNAYESAVVY APVDIAGMQS VITGCDSSNI AMLPSGFSIL PDGLESRPFV ITSRPEDRSS 720 EGGSLLTVAF QILTSSSPTA KLSKESVESI NNLLSCTLHK IKAMKLQAGQ QGMDLPILKH 780 QCNSKMEHFK PRPKTGFLRY NFNGIFVFLS LECQAFK

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence

MVVVDMSNNP PPPSHETKDF FPSPALSLSL AGIFRDGGGE GNSAGNMETM EEVDDESKGG  60
RPREETSTVE ISSENSEPMR SRGSDDDLEH DDTCNEDKED PNNNSRKKKR KKYHRHTVQQ  120
IREMEALFKE SPHPDEKQRQ QLSKQLGLHP RQVKFWFQNR RTQIKAIQER HENSLLKAEI  180
EKLREENKGL REISKNPTCP NCGFASSSNN DPRVPAEEQQ LRIENARLRA EVEKLRAALG  240
KCPLGASPNS SSSYSGGHDE ENKSALDFYT GIFGLEKSRI MHVVNQAMEQ LKKMATCGEP  300
LWIRSFETGR EILNYDEYMK EFPPMEKSGD VKSKRMCIEA SRETGIVFME LPRLLQTFMD  360
VNQWKEMFPS MISKAATVDV ICNGEGANSW DGAVQLMFAE VQMLTPVVGT REVYFVRYCK  420
QIRGGQWGIV DVSVDKVEHN IDASLVKCRK LPSGCILQEQ SNAHCKVTWV EHLECQKGIV  480
DSLYRVIVNS GQAFGARRWM ATLQQQCERL LFFMATNIPT KDTPGVATLA GRKSILTLAQ  540
RMTWSFYRML GASSYNTWNK VPSKTGQEDI RVASRKNLTD PGEPLGLILC AVSSIWLPVS  600
RNVLFDFLKD ENRRHEWDVM SNGGPVQSVA NLAKGQDKGN AVSIQAVKLR ENMWILQDTC  660
TNAYESAVVY APVDIAGMQS VITGCDSSNI AMLPSGFSIL PDGLESRPFV ITSRPEDRSS  720
EGGSLLTVAF QILTSSSPTA KLSKESVESI NNLLSCTLHK IKAMKLQAGQ QGMDLPILKH  780
QCNSKMEHFK PRPKTGFLRY NFNGIFVFLS LECQAFK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	112	RKKKRKK
2	108	112	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein