PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT47155.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 293aa    MW: 33620.4 Da    PI: 6.941
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT47155.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.44e-192572148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd llv++++ +G g+W+  a++ g++Rt+k+c++rw++yl
       PHT47155.1 25 RGPWTNEEDNLLVHYITNHGEGRWNMLAKHAGLKRTGKSCRLRWLNYL 72
                     89********************************************97 PP
2Myb_DNA-binding51.32.6e-1678121146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++ +++++ +lG++ W++Ia++++ gRt++++k++w++
       PHT47155.1  78 RGNLTPQEQLMILELHSKLGNR-WSKIAQYLP-GRTDNEIKNYWRT 121
                      7999******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
METDMSFLSK TSSSSSSDDD IELRRGPWTN EEDNLLVHYI TNHGEGRWNM LAKHAGLKRT  60
GKSCRLRWLN YLKPDVKRGN LTPQEQLMIL ELHSKLGNRW SKIAQYLPGR TDNEIKNYWR  120
TRVQKQARNL KIDANSAAFQ EMIHCLWIPR LLQKIQSSSS VMPSIQSPQS TPQGFNIEKN  180
STNTSRSSSC SSSHSSNIYN STNIMSECPK IPPRDIGDSD LNSFVKAHFP VDDNSYDVDN  240
YGQLATGNYY NDVMDYDQMS GDQNKLTGDV LSDSFWSNMD EFFYQKQDMS HCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.11e-72MYB family protein