PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT47176.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 228aa    MW: 24775.1 Da    PI: 8.8757
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT47176.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.27.1e-304107199
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g+++++++ql+q+++e+
  PHT47176.1   4 SCNGCRVLRKGCNEKCSIKPCLqwiqsPEAQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGNWQLCQAAVEA 102
                 6*************************************************************************************************9 PP

      DUF260  95 allke 99 
                 +l ++
  PHT47176.1 103 VLNGA 107
                 98766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MRLSCNGCRV LRKGCNEKCS IKPCLQWIQS PEAQSNATLF LAKFYGRAGL LNLINSGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWQLCQAAV EAVLNGAPIV KLSAADATSP  120
SLKACDIRHV SKENNSGSEL HKVRTRTRFK RVAGKPELKK QSPEVDDAAR VMWSWCHKED  180
DVIGVGSPSR NSGLSQQRTE EPSREGESGD VDSGSXXXXC RSRAGEAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.15e-76LBD family protein