PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47177.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 392aa MW: 44363 Da PI: 4.5832

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47177.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	29.1	2.1e-09	17	60	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C ++ H+ H++v PHT47177.1 17 ARACDSCLSKRARWFCPADDAFLCQSCDVSVHSAnqlasrHERV 60 578*****************************667888888876 PP
2	CCT	24.5	1e-09	351	372	1	22
CCT 1 ReaallRYkeKrktRkFeKkir 22 Rea+++RY+eKr+tR+F+Kkir PHT47177.1 351 REARVSRYREKRRTRLFSKKIR 372 9********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MMTSESKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV 60 RLETSSNKST VTKFVDQTHQ PCWHQGFTRK ARTPRNGKKA QIGRGKKAEE NRVPEIGSEE 120 NSPDENEFEN EEQLLYQVPV FDSFEAELCT VPDETATITD HLDMLLNGED ACDDLNLPEF 180 LSSDIELAEF AADVESLLGE EDQERTRLSN DAVEDNKSIK IEVEDEEMRE AVACHLDPEL 240 DMAREALNWN FDEYYEETVE QKVLPAAAAA TEFVTSEKYS GSSKADEKGR LLLRLNHEAV 300 ISAWPNQSSP WTNGIRPHFN PDHDYWPDFL ETSGDHQGYY GGHVRSGDGG REARVSRYRE 360 KRRTRLFSKK IRLLRLNIAV LILNLDELDL NA

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MMTSESKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSVHSA NQLASRHERV  60
RLETSSNKST VTKFVDQTHQ PCWHQGFTRK ARTPRNGKKA QIGRGKKAEE NRVPEIGSEE  120
NSPDENEFEN EEQLLYQVPV FDSFEAELCT VPDETATITD HLDMLLNGED ACDDLNLPEF  180
LSSDIELAEF AADVESLLGE EDQERTRLSN DAVEDNKSIK IEVEDEEMRE AVACHLDPEL  240
DMAREALNWN FDEYYEETVE QKVLPAAAAA TEFVTSEKYS GSSKADEKGR LLLRLNHEAV  300
ISAWPNQSSP WTNGIRPHFN PDHDYWPDFL ETSGDHQGYY GGHVRSGDGG REARVSRYRE  360
KRRTRLFSKK IRLLRLNIAV LILNLDELDL NA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68520.1	8e-76	CO-like family protein