PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47396.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WOX

Protein Properties

Length: 395aa MW: 44564.3 Da PI: 7.0808

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47396.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	69.6	3.8e-22	79	138	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psae++++++++l +++ ++V++WFqN++a+e++ PHT47396.1 79 SRWNPTPEQLQTLEELYRRgTRTPSAEQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 138 7***************99************************************97 PP
2	Wus_type_Homeobox	115.4	2.8e-37	78	140	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ PHT47396.1 78 SSRWNPTPEQLQTLEELYRRGTRTPSAEQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 140 79***********************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MWMMGYNDGG DFNMPDSFNG RKLRPLMPRV PHPPNPTANP TNCLRSIHGD NFIALNHHQL 60 AMSEQNKRDF HTQQLVVSSR WNPTPEQLQT LEELYRRGTR TPSAEQIQHI TAQLRRYGKI 120 EGKNVFYWFQ NHKARERQKR RRQLESAANG AAAGGDDQSH SNCNAENTER KESGANRTVF 180 EIEQTKHWPS PTNCSTIPEK TAATTKAMAA AAGGVAESCR AAAEKWIPFD EGEQRRSLLA 240 ERNATWQMMH LSCSTPNNTN TIHLMNNNST STICSNIVTA TSNPITNSCP STPRTMDHQP 300 KQLFKPKDHL NIFIAPFRSA CDQKQHENIV NVIGDDDEEG HGESQTLELF PLRSSSDNND 360 ENIFCDKDEI GAAANSNNNF NGSHYQFFEF LPLKN

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MWMMGYNDGG DFNMPDSFNG RKLRPLMPRV PHPPNPTANP TNCLRSIHGD NFIALNHHQL  60
AMSEQNKRDF HTQQLVVSSR WNPTPEQLQT LEELYRRGTR TPSAEQIQHI TAQLRRYGKI  120
EGKNVFYWFQ NHKARERQKR RRQLESAANG AAAGGDDQSH SNCNAENTER KESGANRTVF  180
EIEQTKHWPS PTNCSTIPEK TAATTKAMAA AAGGVAESCR AAAEKWIPFD EGEQRRSLLA  240
ERNATWQMMH LSCSTPNNTN TIHLMNNNST STICSNIVTA TSNPITNSCP STPRTMDHQP  300
KQLFKPKDHL NIFIAPFRSA CDQKQHENIV NVIGDDDEEG HGESQTLELF PLRSSSDNND  360
ENIFCDKDEI GAAANSNNNF NGSHYQFFEF LPLKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	6e-54	WOX family protein