PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT47610.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28703.2 Da    PI: 9.3273
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT47610.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.88e-301059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                rienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fss+gkl+eys+
  PHT47610.1 10 RIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSSKGKLFEYST 59
                8***********************************************96 PP
2K-box106.33.6e-35761742100
       K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ++++ ++++ ++  s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+LeqqL+++lk+iRs+Kn+l++e+i+elqkk k+lqe+n++L+k+++e
  PHT47610.1  76 AERQLNATDVETPGSWTFEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEQQLDSALKHIRSRKNQLMHESISELQKKDKALQEQNNNLSKQMKE 174
                 566777777888899********************************************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MGRGRVQLRR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFSS KGKLFEYSTD  60
SCMERILERY ERYSYAERQL NATDVETPGS WTFEHAKLKA RLEVLQRNQR HYAGEDLDSL  120
SMKELQNLEQ QLDSALKHIR SRKNQLMHES ISELQKKDKA LQEQNNNLSK QMKEREKQLA  180
QQHTPWEQQN HDHLNSSSFG LPHPFNNNHL GEVYPTAGDN GEVEGSSRQQ QQNAAVMPPW  240
MLRHLNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-107MIKC_MADS family protein