PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47611.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 245aa MW: 28076.7 Da PI: 9.0623

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	76.1	2.6e-24	9	46	1	38
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i PHT47611.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI 46 79***********************************9 PP
2	K-box	99.2	5.9e-33	81	173	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++++++++ ++e+ +Lk+++e Lqr+qR++lGedL++Ls k+L+qLe+qLe+slk+iRs+K++++l+q+ +lq++e++l e n+ Lr+klee PHT47611.1 81 N-QSATDNQNNYHEYLRLKARVELLQRSQRNFLGEDLGTLSTKDLEQLENQLESSLKQIRSRKTQFMLDQLADLQQREQMLAESNRLLRRKLEE 173 3.678889***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIXGPS LPKTLNYLLS 60 TLILFLLSLN LRCSYATLEA NQSATDNQNN YHEYLRLKAR VELLQRSQRN FLGEDLGTLS 120 TKDLEQLENQ LESSLKQIRS RKTQFMLDQL ADLQQREQML AESNRLLRRK LEESTAGFPV 180 RLSWEDGADQ AMHQHNRLPH TEGFFQPLGL HSSPPHFGYN PVNTDEVNAA ATAHNMNGFI 240 HGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.1	6e-69	MIKC_MADS family protein