PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47637.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 603aa MW: 68788.4 Da PI: 5.0076

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	574	592	2	20
EETTTTEEESSHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHi 20 +C Cg+ F ++ +L++H+ PHT47637.1 574 SCDTCGEEFDSRNQLHKHL 592 6*****************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 603 aa Download sequence
MASEAAEKRC LYEILGVNRD CTADEIRSAY RKLALQRHPD KLVRSGVPES EATAAFQELV 60 NAYEVLSDAR ERAWYDSHRS QILFSNSGPT SSGNSGSVPN LFSFFSNSVY SGYSDKGKGF 120 YKVYGDLFEK IYQNELNFAR KLGTEFPKEA PLMGNLESPY AQVTAFYSYW LGFVTVMDFC 180 WVDQYDVMAG PNRKSRRVME DENKKLRKKA RREYNETVRG LAEFVKKRDK RVIDMQMKRN 240 EEMEKKKEEE RKRKKELERE KAERAKKYVE PEWSKAEELE DDGLEEESDE DEKKKVDGKE 300 LYCVVCSKKF KSEKQWKNHE QSKKHKEKVA ALREAFDDED DEYAELVEDG ASEDIDDGVD 360 ELAERLESST LIQEDEREDD EVQSSEEDET TNYQSGSNLK RAVDELGLDD DDEASVLEAM 420 ISGRKSRKNA GPGGNRQTPT KNVQGESGND EMDFMEYNNL RSSRRNKGGR KQRNRRPHEE 480 EEEARGGGNS EQVQLDTEVD NAYNDSSACQ GLSSQTSAER ENDHEGDDVS GDGEKVSSKG 540 TEKKTTVKKD KVNKSKDTTK GRKQKAKSKS SSNSCDTCGE EFDSRNQLHK HLGSTGHAKL 600 KSR

Sequence ? help Back to Top

Protein Sequence Length: 603 aa Download sequence

MASEAAEKRC LYEILGVNRD CTADEIRSAY RKLALQRHPD KLVRSGVPES EATAAFQELV  60
NAYEVLSDAR ERAWYDSHRS QILFSNSGPT SSGNSGSVPN LFSFFSNSVY SGYSDKGKGF  120
YKVYGDLFEK IYQNELNFAR KLGTEFPKEA PLMGNLESPY AQVTAFYSYW LGFVTVMDFC  180
WVDQYDVMAG PNRKSRRVME DENKKLRKKA RREYNETVRG LAEFVKKRDK RVIDMQMKRN  240
EEMEKKKEEE RKRKKELERE KAERAKKYVE PEWSKAEELE DDGLEEESDE DEKKKVDGKE  300
LYCVVCSKKF KSEKQWKNHE QSKKHKEKVA ALREAFDDED DEYAELVEDG ASEDIDDGVD  360
ELAERLESST LIQEDEREDD EVQSSEEDET TNYQSGSNLK RAVDELGLDD DDEASVLEAM  420
ISGRKSRKNA GPGGNRQTPT KNVQGESGND EMDFMEYNNL RSSRRNKGGR KQRNRRPHEE  480
EEEARGGGNS EQVQLDTEVD NAYNDSSACQ GLSSQTSAER ENDHEGDDVS GDGEKVSSKG  540
TEKKTTVKKD KVNKSKDTTK GRKQKAKSKS SSNSCDTCGE EFDSRNQLHK HLGSTGHAKL  600
KSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	230	RKSRRVMEDENKKLRKKARREYNETVRGLAEFVKKRDK
2	204	212	KKLRKKARR
3	251	255	RKRKK
4	251	256	RKRKKE
5	464	477	RRNKGGRKQRNRRP
6	465	476	RNKGGRKQRNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-135	C2H2 family protein