PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47654.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 518aa MW: 58558.7 Da PI: 4.7368

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.6	3.3e-25	355	403	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++skyF++pi++AAkeL+++lT+LK++CR +GI+RWPhRk+ sl PHT47654.1 355 MLSRDKISKYFYMPITQAAKELNIGLTLLKKRCRDLGIRRWPHRKLMSL 403 58899*****************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 518 aa Download sequence
MEETEPVANE ALAMAEKEET SVEKMEVEVQ AADDAAESGG SKRPRQEEDK PEDEENGDNT 60 KKPKVEPSVE EEKENGSDPV SVGPKSFASS VEMFDYFCKL LHSWSLNLNL NKYEHLMLLD 120 LIKKGHSEPG RKIGTGVRAF QIRYHPKFKS RCFFVVREDD SVDDFSFRKC VDQIQPLPAN 180 MQTKHYASGG KSGGGGGRGG GYGRGRGRGG SPNMGSDHSN FEVMTNQDIP IQLPPLDDFS 240 EYSGYCAIDY QYDLSIQEST ANNNIPLMEM ELEDPFYSSF YSLTTGELCY DESGNGFRMW 300 NEFGLSGELI GSGSQQLLLC DEINQQVIMG NDRVEENIVT EKEKQSDQEI SSSRMLSRDK 360 ISKYFYMPIT QAAKELNIGL TLLKKRCRDL GIRRWPHRKL MSLQTLIKNV KELEKGGGKG 420 MEQKLKDVIK LLEEEKKKME EVPDMELEEK TKRLRQACFK ANYKRRRMMC MPELQASFGS 480 YCTADPNALN GGDEDDEEIK SLLADCFSNN NSPSLHEY

Sequence ? help Back to Top

Protein Sequence Length: 518 aa Download sequence

MEETEPVANE ALAMAEKEET SVEKMEVEVQ AADDAAESGG SKRPRQEEDK PEDEENGDNT  60
KKPKVEPSVE EEKENGSDPV SVGPKSFASS VEMFDYFCKL LHSWSLNLNL NKYEHLMLLD  120
LIKKGHSEPG RKIGTGVRAF QIRYHPKFKS RCFFVVREDD SVDDFSFRKC VDQIQPLPAN  180
MQTKHYASGG KSGGGGGRGG GYGRGRGRGG SPNMGSDHSN FEVMTNQDIP IQLPPLDDFS  240
EYSGYCAIDY QYDLSIQEST ANNNIPLMEM ELEDPFYSSF YSLTTGELCY DESGNGFRMW  300
NEFGLSGELI GSGSQQLLLC DEINQQVIMG NDRVEENIVT EKEKQSDQEI SSSRMLSRDK  360
ISKYFYMPIT QAAKELNIGL TLLKKRCRDL GIRRWPHRKL MSLQTLIKNV KELEKGGGKG  420
MEQKLKDVIK LLEEEKKKME EVPDMELEEK TKRLRQACFK ANYKRRRMMC MPELQASFGS  480
YCTADPNALN GGDEDDEEIK SLLADCFSNN NSPSLHEY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	197	GGKSGGGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-34	Nin-like family protein