PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47680.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 475aa MW: 53173.6 Da PI: 8.3023

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	97	115	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ CgksF+++ L H++ PHT47680.1 97 CKECGKSFPSWKALFGHMK 115 ******************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MGEDQEVVVL KHVCKFCNKS FHCGRSLGGH MRSHMITTTD GETSRKKLPA SIISNVDLDM 60 GTQSANYGLR ENPKKTSKFD QDDALLPNQN NNNNKACKEC GKSFPSWKAL FGHMKCHSSS 120 MNNSVEEDSW NSGKQLVLMD SESDTEAAAA APNKKKRSSR KMMKRYMVPT TSSSLTVGAN 180 ASPCVSEIEH EQEEIAMSLI MLSRDVGNWV GQNHVTECSD NNSQFLQSSS RLSTKCKDDS 240 GGDLVKLTKK VKNGKTEQGE CSKSPTNGQK RDKSQLPTDH KFLGDEKKKR IKVDNEHRVV 300 EMDPDPRENS SKIKFECTTC NRSFHSYQAL GGHRASHKNT KVGNFTSIDI DHHVKQIKNF 360 SNESGINEFE LKTDNNCGSK KHECPICFKI FPSGQALGGH KRSHLIAEAK RNNHNQSVQV 420 HKPVPEIRNF LDLNLPAPVE EDTMLDSSST EHIEFKQWWI DSSHKHEQLL GLLSS

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MGEDQEVVVL KHVCKFCNKS FHCGRSLGGH MRSHMITTTD GETSRKKLPA SIISNVDLDM  60
GTQSANYGLR ENPKKTSKFD QDDALLPNQN NNNNKACKEC GKSFPSWKAL FGHMKCHSSS  120
MNNSVEEDSW NSGKQLVLMD SESDTEAAAA APNKKKRSSR KMMKRYMVPT TSSSLTVGAN  180
ASPCVSEIEH EQEEIAMSLI MLSRDVGNWV GQNHVTECSD NNSQFLQSSS RLSTKCKDDS  240
GGDLVKLTKK VKNGKTEQGE CSKSPTNGQK RDKSQLPTDH KFLGDEKKKR IKVDNEHRVV  300
EMDPDPRENS SKIKFECTTC NRSFHSYQAL GGHRASHKNT KVGNFTSIDI DHHVKQIKNF  360
SNESGINEFE LKTDNNCGSK KHECPICFKI FPSGQALGGH KRSHLIAEAK RNNHNQSVQV  420
HKPVPEIRNF LDLNLPAPVE EDTMLDSSST EHIEFKQWWI DSSHKHEQLL GLLSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	287	314	KKKRIKVDNEHRVVEMDPDPRENSSKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	1e-33	C2H2 family protein