PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT47838.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 318aa MW: 36491.3 Da PI: 4.7842

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT47838.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	83	136	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le++F +++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k PHT47838.1 83 KKRRLTDNQVQFLEKCFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 136 56689************************************************9 PP
2	HD-ZIP_I/II	126.1	1.6e-40	82	172	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+++qv++LE++F ee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEk+ye L+++yd lk++ ++L ke+e+Lr e+ PHT47838.1 82 EKKRRLTDNQVQFLEKCFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKTKQLEKEYEELRNRYDDLKSNYNTLLKEKENLRVEV 172 69*************************************************************************************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MMARGMLYGG GSNFDQKQRD MYFSTAKEHL GSLFGPDCSS FFGSSSMVSF RGVNGGKRSF 60 FDSFDQEDNE ADELGEYFHQ AEKKRRLTDN QVQFLEKCFG EENKLEPERK VQLAKELGLQ 120 PRQIAIWFQN RRARWKTKQL EKEYEELRNR YDDLKSNYNT LLKEKENLRV EVFQLTDKLL 180 VKEKGNGQLT LCDIQKQSNA SVEVTVADPI SRVELSNVPS RILKQQKQED LSSAKSDVFD 240 SESPHYTDKR HSTFIDQGDS ARVFETEQSD LSQDDDENFG KAMLSTANLL GKVEDDDYPA 300 TSSNMHYFGF PSDDQGFG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	139	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-40	HD-ZIP family protein