PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48009.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 179aa MW: 20700.8 Da PI: 10.086

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.1	3.7e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLC+a+va+iifs++gklye++s PHT48009.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAQVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	88.5	1.3e-29	82	172	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 l+++++++++qe+ kLk+++e Lq++qRh+lGedL++L+ k+L+ Le+qL++sl++iRsk+++ +l+q+ +lq+ke++l e+n++L+ kl+ PHT48009.1 82 LSSKDSQNSYQEFIKLKARVEVLQQSQRHILGEDLGQLNKKDLELLERQLDSSLRQIRSKRTQNMLDQLTDLQQKEQSLLEINRSLKLKLQ 172 678999********************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AQVALIIFSN RGKLYEFCST 60 SSMSEILERY HRCSYGDLAA GLSSKDSQNS YQEFIKLKAR VEVLQQSQRH ILGEDLGQLN 120 KKDLELLERQ LDSSLRQIRS KRTQNMLDQL TDLQQKEQSL LEINRSLKLK LQVQSGPIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	3e-83	MIKC_MADS family protein