PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT48010.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 71aa    MW: 7989.2 Da    PI: 10.0646
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT48010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.61.7e-281059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                r enk+nrqvtfskRr g+ KKA+E+SvLCdaeva+iifs++ kl+e+ss
  PHT48010.1 10 RTENKTNRQVTFSKRRGGLVKKAQEISVLCDAEVALIIFSHNAKLFEFSS 59
                789*********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    
MGRGKVELRR TENKTNRQVT FSKRRGGLVK KAQEISVLCD AEVALIIFSH NAKLFEFSSD  60
SCEGRDCSLK V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-31MIKC_MADS family protein