PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48068.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 187aa MW: 20475.3 Da PI: 5.225

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48068.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.9	3.5e-43	29	128	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+ae a++++ PHT48068.1 29 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGAICQLQKQISELQAEFAKAHA 127 7***********************************************************************************************998 PP DUF260 100 e 100 e PHT48068.1 128 E 128 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence
MNSSSSSFSS SVATATSSIL STPPVILSPC AACKILRRRC VEKCVLAPYF PPTEPLKFTI 60 AHRVFGASNI IKMLQELPEE QRADAVNSMV YEANARIRDP VYGCAGAICQ LQKQISELQA 120 EFAKAHAEIM NLKCQNSNLL ALVCMEVSEN SSSSSLLSSD HINDYGNNTS MFLEDNSVYA 180 AWEPLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	7e-73	LBD family protein