PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48081.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 370aa MW: 42413.8 Da PI: 8.3316

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	150.4	1.2e-46	114	256	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec...eaesssssasnsss 87 + kkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL++ ++ aikel ++ + +++ssss+++n+s PHT48081.1 114 TCKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFNRSNNAIKELSENiqpkeysdgnK------ItitSNNSSSSEGKNDSL 206 689***********************************************************55554433330......233344444444444444 PP TCP 88 g.....kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133 ++ + ++k++ s+ + n++k esr+karararert+ekm+ik PHT48081.1 207 MsefeeNSING--RKEKEKLSEMVQDNPHKrESREKARARARERTKEKMMIK 256 45553222223..333333333444788889****************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence
MFPSSNTHEP YSHTSKTFLE GSFTYDYQNP ISSSRQENPF FLNFPSLFLD DHHHESPLSQ 60 ILPHKHQDQQ PSDHHAKEGN FTHISGETSK EEMSIEAKTS SKKRNLSATP RRRTCKKDRH 120 SKICTAQGVR DRRVRLSLHI ARKFFDLQDM LGFDKASKTI EWLFNRSNNA IKELSENIQP 180 KEYSDGNKIT ITSNNSSSSE GKNDSLMSEF EENSINGRKE KEKLSEMVQD NPHKRESREK 240 ARARARERTK EKMMIKGLEK CKEWYETNPN NMFNQLGSSR RNSGFLDQDS NYNSYNTSVN 300 QEKGSPHEAN SQSLGHHFAI QNYFGGASTS GLDSGNCFMS FLGNWEINYA PIKSSSYSPF 360 AELAVVLEQQ

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence

MFPSSNTHEP YSHTSKTFLE GSFTYDYQNP ISSSRQENPF FLNFPSLFLD DHHHESPLSQ  60
ILPHKHQDQQ PSDHHAKEGN FTHISGETSK EEMSIEAKTS SKKRNLSATP RRRTCKKDRH  120
SKICTAQGVR DRRVRLSLHI ARKFFDLQDM LGFDKASKTI EWLFNRSNNA IKELSENIQP  180
KEYSDGNKIT ITSNNSSSSE GKNDSLMSEF EENSINGRKE KEKLSEMVQD NPHKRESREK  240
ARARARERTK EKMMIKGLEK CKEWYETNPN NMFNQLGSSR RNSGFLDQDS NYNSYNTSVN  300
QEKGSPHEAN SQSLGHHFAI QNYFGGASTS GLDSGNCFMS FLGNWEINYA PIKSSSYSPF  360
AELAVVLEQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	1e-30	TCP family protein