PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48286.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 220aa MW: 25582.7 Da PI: 6.6298

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48286.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l +v+++G ++W+ +++ g+ R++k+c++rw ++l PHT48286.1 14 RGAWSEDEDNKLRAYVERFGHPNWRQLPKYAGLMRCGKSCRLRWMNHL 61 89********************************************97 PP
2	Myb_DNA-binding	53.5	5.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ + eE++l+++++k+lG++ W+ Ia+ ++ gR+++++k++w+ + PHT48286.1 67 KGNYSLEEEQLIIKLHKELGNR-WSVIAANLP-GRSDNDVKNHWHAH 111 7899****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MVRTPIIDKN GIKRGAWSED EDNKLRAYVE RFGHPNWRQL PKYAGLMRCG KSCRLRWMNH 60 LRPGLKKGNY SLEEEQLIIK LHKELGNRWS VIAANLPGRS DNDVKNHWHA HLKKRMRLTN 120 CINNSSMSME QFTESTQSGS SQLDERSASM NVVVDTSPTL LPTSFPEVSS SDLYSITDWI 180 EEESMELLAA DTFSWTNYPI DNFQTESFDH FWTQPFDTFF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	6e-54	MYB family protein