PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48573.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 242aa MW: 27936.7 Da PI: 9.0571

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48573.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.8e-07	25	64	3	40
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 WT+eE +++ a + + +W+++a+ ++ g++ ++ PHT48573.1 25 EWTKEENKRFESALAIYDETtpnRWSKVAEIIP-GKSVLDV 64 7***************99**********.998776 PP
2	Myb_DNA-binding	41.5	3e-13	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky PHT48573.1 122 PWTEEEHRRFLMGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 166 8***************************789*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
METLCPTSFV PNSNWTMQQS KSTTEWTKEE NKRFESALAI YDETTPNRWS KVAEIIPGKS 60 VLDVMMQYKE LVADVSDIEA GLVPNPRRFV SSFALEFADH RKIHTFSKRG KSYDQERKKG 120 VPWTEEEHRR FLMGLEKYGK GDWRNISRNF VISKTPTQVA SHAQKYYLRQ LSGEKERKRP 180 SIHDITTVNL TNNELLNNNN KLMCEVKSYM SPLQRSTSPA DVLIGCWNNS FDGDLMALGQ 240 FV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	2e-76	MYB_related family protein