PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT48653.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22658 Da    PI: 8.6185
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT48653.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.11.1e-131758949
                HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                ++ t+ kR + + KKA+ELS+LCd+ev +i fs+  + ++ +
  PHT48653.1 17 KKATLEKRFQSLCKKAKELSILCDIEVGIIAFSHAeNDIFAW 58
                5789*****************************851455555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MTKKGVRTTR NLDSKIKKAT LEKRFQSLCK KAKELSILCD IEVGIIAFSH AENDIFAWPS  60
IIQAIDRVKN YLACVETKKP VKFQKHETYL QSIVDAQEKY IDQIEQKVEK MEMENLFREL  120
VNARKRFDEL EDREIKEASL NLLGATEEAD GPSDKRRTLA QTIAMRQKTD SLAKCDEEGR  180
RTIGLAMDHR TPPSQLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.15e-18M-type_MADS family protein