PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT48848.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 225aa MW: 26485.6 Da PI: 7.2107

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT48848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	8.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl PHT48848.1 14 KGPWTLEEDQILISFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	58.8	1.2e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++++++++++lG++ W++Ia++++ gRt++++k++w+++l PHT48848.1 67 RGNFSEEEEQIIIKLHQLLGNR-WSAIASRLP-GRTDNEIKNFWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MVRAPCCEKM GLKKGPWTLE EDQILISFIQ KYGHENWRAL PKQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SEEEEQIIIK LHQLLGNRWS AIASRLPGRT DNEIKNFWHT HLKKRLEQHN 120 IDLASATTTK QSHEMTTNVT QNIDHHIISP NYYQDSQNMV TYHPTYCHDH QENNSSSHDH 180 TQSNKEEIIQ YSTNYGHEDM TSFNNDMVFW YNVFMSSGNN TFEIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	7e-76	MYB family protein