PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49098.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 489aa MW: 54422.1 Da PI: 4.3379

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	14	61	1	47
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 rg+WT eEdellv++++ G g +W++Ia+ ++ gRt++++k++w++ PHT49098.1 14 RGKWTIEEDELLVKYIQANGEGswRWSLIAQDLP-GRTDNEIKNYWNSN 61 89******************************.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MMKAPCCEKV GLKRGKWTIE EDELLVKYIQ ANGEGSWRWS LIAQDLPGRT DNEIKNYWNS 60 NLRRRLYSFR NFKELIKTTT NVPKIAVDGD SDESLRKQDT STMSKEGSIE SLLPEDNIVV 120 DRGSTRKNRS LCVGSNEGAT WSEGDSTESL LSENCTVDIG SMWKPYSSCP RGKDDVPWYR 180 GGSTESLLLE NIEINFACEE NSIGSLLMEN CSCPRGKDDT SWSEEGGSFK SLLLENIETN 240 FSCPKGTYNA TWSEGGSVEF FSLENCVVDL GSNRENKPVW SDKGGSIEYL LTENYTVDIG 300 FNRETNSSSC PRGNAEAMWY EVGSSIESSS TESYIVDLDF LTQSPTHKTE ELAMQQHEHH 360 AKSKIHEPNE EEEEDKNIKD IIHDSPKQQL CQGIWSIGEQ EQLIQGPHEQ NEENEISQIH 420 LRLGSQSACQ LGPGREGGVS VSKSFTLVGE SNDNLLLWTL NDSLLMMDGA APPVGSAATL 480 MGPATRDLD

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MMKAPCCEKV GLKRGKWTIE EDELLVKYIQ ANGEGSWRWS LIAQDLPGRT DNEIKNYWNS  60
NLRRRLYSFR NFKELIKTTT NVPKIAVDGD SDESLRKQDT STMSKEGSIE SLLPEDNIVV  120
DRGSTRKNRS LCVGSNEGAT WSEGDSTESL LSENCTVDIG SMWKPYSSCP RGKDDVPWYR  180
GGSTESLLLE NIEINFACEE NSIGSLLMEN CSCPRGKDDT SWSEEGGSFK SLLLENIETN  240
FSCPKGTYNA TWSEGGSVEF FSLENCVVDL GSNRENKPVW SDKGGSIEYL LTENYTVDIG  300
FNRETNSSSC PRGNAEAMWY EVGSSIESSS TESYIVDLDF LTQSPTHKTE ELAMQQHEHH  360
AKSKIHEPNE EEEEDKNIKD IIHDSPKQQL CQGIWSIGEQ EQLIQGPHEQ NEENEISQIH  420
LRLGSQSACQ LGPGREGGVS VSKSFTLVGE SNDNLLLWTL NDSLLMMDGA APPVGSAATL  480
MGPATRDLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49330.1	2e-25	MYB family protein