PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49266.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17349.8 Da    PI: 9.5815
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49266.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.12e-17250149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k ie++  r+vt+skR++g+ KKA+E S+L++a+v v+++  +gk + y
  PHT49266.1  2 KLIEDNKARTVTLSKRKKGLYKKAKEYSTLTGADVGVVLITASGKAHSY 50
                569******************************************9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MKLIEDNKAR TVTLSKRKKG LYKKAKEYST LTGADVGVVL ITASGKAHSY GSTSIEKIID  60
KFLELKQDDR QSDHDDMGKS DVFETFEDLC KEVQALNEKE KERILRYKIM HPHSEVPPDK  120
HRLEQREAIK SWLDKIKKGK ERSCSSQANQ V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-15M-type_MADS family protein