PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49267.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17344.9 Da    PI: 9.825
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85e-171663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 ie++   ++t+skR++g++KKA+E S+L++a+v v+++  +gk + y
  PHT49267.1 16 LIEDNEAHTTTLSKRKKGLFKKANEYSTLTGADVGVVLITASGKSHSY 63
                6999***************************************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MDKRTGKGRQ KIEMKLIEDN EAHTTTLSKR KKGLFKKANE YSTLTGADVG VVLITASGKS  60
HSYGSISIEK ITDKFLELKQ GDRQSDHDDV GKLDVFETFE DLRKEVQALN EKEKERILDK  120
HKLEQLEAIK LWLDKIKKEK KRSCSIQVNQ V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.17e-18M-type_MADS family protein