PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49553.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20256.9 Da    PI: 8.8972
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF36.94.8e-121664250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ie +  r+ tfskRr g++KKA+ L    d++  +++ s+t+k+y + 
  PHT49553.1 16 KIEKDAHRYSTFSKRRSGLFKKASQLVRENDVDLGIVLTSPTDKVYAFV 64
                59999*****************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MEGKKTTGRR KIPLVKIEKD AHRYSTFSKR RSGLFKKASQ LVRENDVDLG IVLTSPTDKV  60
YAFVHPTSNA VIDRFINLKT DFGDRFVAEN SRDKVNQLND RLNELDKREE IAKESLLALN  120
EMDKTREKNR WEFIDQLNAD EVMKFQAWLD VGEVMLKDQL PKASSSSQSP PEDANI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22M-type_MADS family protein