PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49555.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 181aa    MW: 20937.7 Da    PI: 7.6023
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49555.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.62.5e-111558144
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                k+ie +  r +tfskRr g+ KKA+EL    d++  +++ s+t 
  PHT49555.1 15 KKIEKYVDRCTTFSKRRSGLYKKASELVRENDVDLGIVLTSPTE 58
                689************************99999999999999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    
MDGKKTAGRQ KIPLKKIEKY VDRCTTFSKR RSGLYKKASE LVRENDVDLG IVLTSPTEAE  60
KVYSFIHPTH YAVIDRFMNP TQEFDLGEHL VAENTRKKVN QLNDRLNELD RREKNAKDRM  120
TSLSEMNKTR EKSRWESIDQ LNADDIMKFE AWLDIGEVML KDQLREASSS SSQSPPVDAD  180
I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.16e-20M-type_MADS family protein