PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49596.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 642aa MW: 71596.7 Da PI: 6.4755

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.3	2.1e-06	177	196	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ffar G+C G++C+F H PHT49596.1 177 RCEFFAR-GWCIKGNSCRFLH 196 5****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MWEVALEVQL LDIGSVEGSD NRRWQEYGNQ ILEPLGLEQH LRPAFSTQQE PVANLLQHTP 60 LIKCGNDSCR ISNSDETRER IDGKRILINS DVQASGFECG ETNTKRIQPF GQELDAEILT 120 DVKGKEAVGV QFTEGGDQEA VNDLKQTSRR LDVLKTRQRS LSPAADSRGG SKRLAMRCEF 180 FARGWCIKGN SCRFLHIKEH VTSHEKDGSL DETMMKSKIA DDKGLEENCK TSVLDGSSDS 240 VQSAVRSGEN LKLREELYMR TGGPSSTPDI GRESLGCNPY LAAYSASSSQ FLKDGSLHKN 300 SLHHDLRHCS SSRKIDALDD QRLLDSSQEY SSSRSTSLQH KSSAFPSSKA RLSQIDLSRD 360 TRHSSDYRTV GSFDDWEPSV PFRPSFLLTQ MIGFPESLYD PIRDSIDQSN VGDGPSKFST 420 SGKGGSVLTK HMQTNADPVS TGTLGPEQSS NKVPISGQIH HRDILPDNLS DKDLPSNETD 480 TADTAVAHQE NMNTSSKEEK LSSSANLKGV TKADKFNLST EVLQSRPRKK THLESERLRQ 540 GNEIDTDWKK DRSVNKESRV MKQFHAALVE FVKELLRPTW SEGLMSKDAY KMIVKKTVDK 600 VEHSLHPNQI PNTAESIEEY FDISQPKLAK LIEAYVEKYG KA

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MWEVALEVQL LDIGSVEGSD NRRWQEYGNQ ILEPLGLEQH LRPAFSTQQE PVANLLQHTP  60
LIKCGNDSCR ISNSDETRER IDGKRILINS DVQASGFECG ETNTKRIQPF GQELDAEILT  120
DVKGKEAVGV QFTEGGDQEA VNDLKQTSRR LDVLKTRQRS LSPAADSRGG SKRLAMRCEF  180
FARGWCIKGN SCRFLHIKEH VTSHEKDGSL DETMMKSKIA DDKGLEENCK TSVLDGSSDS  240
VQSAVRSGEN LKLREELYMR TGGPSSTPDI GRESLGCNPY LAAYSASSSQ FLKDGSLHKN  300
SLHHDLRHCS SSRKIDALDD QRLLDSSQEY SSSRSTSLQH KSSAFPSSKA RLSQIDLSRD  360
TRHSSDYRTV GSFDDWEPSV PFRPSFLLTQ MIGFPESLYD PIRDSIDQSN VGDGPSKFST  420
SGKGGSVLTK HMQTNADPVS TGTLGPEQSS NKVPISGQIH HRDILPDNLS DKDLPSNETD  480
TADTAVAHQE NMNTSSKEEK LSSSANLKGV TKADKFNLST EVLQSRPRKK THLESERLRQ  540
GNEIDTDWKK DRSVNKESRV MKQFHAALVE FVKELLRPTW SEGLMSKDAY KMIVKKTVDK  600
VEHSLHPNQI PNTAESIEEY FDISQPKLAK LIEAYVEKYG KA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-27	C3H family protein