PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49628.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20310.2 Da    PI: 9.4169
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49628.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.81.6e-091663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ie +  r+ tfskR  g+ KKA+EL    d++  +++ s+t+k y +
  PHT49628.1 16 KIEKDADRYSTFSKRCFGLYKKASELVRENDVDLGIVLTSPTDKTYAF 63
                599999**************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MERKKTAGRR KIPLVKIEKD ADRYSTFSKR CFGLYKKASE LVRENDVDLG IVLTSPTDKT  60
YAFVHPTSTA VIDRFMNLKT DFSDQIVAEN SRNKVNQLND RLNELDKRGK IVKGRLLALS  120
EMNKNREKNR WEFIDQLNTD EIMKFQAWLD VGEVMLKDQL PEASSSLQSP PEDANI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-20M-type_MADS family protein