PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49634.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20483.4 Da    PI: 8.1742
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49634.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.9e-091664250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ie +  r+ tfskR  g+  KA+EL    +++ ++++ s+t+k y + 
  PHT49634.1 16 KIEKDVDRYSTFSKRCFGLYRKASELVRENEVDLCIVLTSPTDKTYAFV 64
                59999***************************************99985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MERKKTAGRR KIPLVKIEKD VDRYSTFSKR CFGLYRKASE LVRENEVDLC IVLTSPTDKT  60
YAFVNPTSNA VIDRFMNLKT YFGDQIIAEN FRNKVNQLND RLNELDKREE IAKEKLLTLN  120
EMNKTIEKNR WESIAQLNAN EIIKFQAWLD VGEFMLKDQL PEASSSSQSL PEDANI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-17M-type_MADS family protein