PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49636.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20343.1 Da    PI: 8.4274
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49636.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF28.81.5e-091664250
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                +ie +  r+ tfskR  g+ KKA+EL    +++  +++ s+t+k y + 
  PHT49636.1 16 KIEKDVDRYSTFSKRCSGLYKKASELVRENEVDLGIVLTSPTDKTYAFV 64
                59999***********************9*************9999885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MERKKTAGRQ KISLVKIEKD VDRYSTFSKR CSGLYKKASE LVRENEVDLG IVLTSPTDKT  60
YAFVNPTSNV VIDHFMNLKT YFGDQIIAEN FHNKVNQLND RLNELDKREK IAKEKLLTLN  120
EMNKTREKNR WESIAQLNAN EIIKFQAWLD VGEFMLKDQL PEASSSSQSL PEDANI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-16M-type_MADS family protein