PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49705.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 691aa    MW: 75848 Da    PI: 6.7879
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.1e-192277156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t+ q++e+e++F+++++p+ ++r+eL k+lgL+  qVk+WFqN+R+++k
  PHT49705.1 22 KKRYHRHTQIQIQEMESFFKECPHPDDKQRKELGKRLGLEPLQVKFWFQNKRTQMK 77
                688899***********************************************998 PP
2START215.22.3e-672114311206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+ +ep+W k      e + ++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +a    +  tlev+s
  PHT49705.1 211 ELAVAAMEELIRMAQTGEPLWIKTLdnssETLSEEEYFRTFPRGIGpkplgLTSEASRESAVVIMNHINLVEILMDVN-QWTSVFAglvsRSLTLEVLS 308
                 57899*******************999999999**********999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+ +fvRy++ + +g+w++vdvS+d+ ++      v R++++pSg+li++++ng+skvtw+ehv++++r++h
  PHT49705.1 309 TGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHADGTWAVVDVSLDHLRPTA----VSRGRRRPSGCLIQELPNGYSKVTWIEHVEVDDRSVH 403
                 *******************************************************976....8************************************ PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++r+lv+sgla+gak+wvatl+rqce+
  PHT49705.1 404 NIYRPLVNSGLAFGAKRWVATLDRQCER 431
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    
MMNLRANQWQ XNEDPNQRPN KKKRYHRHTQ IQIQEMESFF KECPHPDDKQ RKELGKRLGL  60
EPLQVKFWFQ NKRTQMKAQH ERHENSELRG ENEKLRAENI RYKEALGNAS CPNCGGPASI  120
GEMSFDEQHL RIENARLREE IDRISGIAAK YVGKPMLTYP NLSTTGPAHS VDLGVGNFGP  180
QTGLVAEIYN ASDLLRSVSG PTDADKPIII ELAVAAMEEL IRMAQTGEPL WIKTLDNSSE  240
TLSEEEYFRT FPRGIGPKPL GLTSEASRES AVVIMNHINL VEILMDVNQW TSVFAGLVSR  300
SLTLEVLSTG VAGNYNGALQ VMTAEFQVPS PLVPTRENYF VRYCKHHADG TWAVVDVSLD  360
HLRPTAVSRG RRRPSGCLIQ ELPNGYSKVT WIEHVEVDDR SVHNIYRPLV NSGLAFGAKR  420
WVATLDRQCE RLASAMAINI PTGEVGVITS PDGRKSMLKL AERMVMSFCA GVGASTAHTW  480
TTLSGSGADD VRVMTRKSID DPGRPPGIVL SAATSFWLPV SPKRVFDFLR DENSRSEWDI  540
LSNGGLVQEM AHIANGRDPG NCVSLLRVNS GNSSQSNMLI LQESSTDSTG SYVIYAPVDI  600
VAMNVVLSGG DPDYVALLPS GFAILPDGGG GINTTCTSGS LLTVAFQILV DSIPTAKLSL  660
GSVATVNSLL KCTVERIKNA LACDTMPNGK I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein