PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT49843.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 211aa MW: 25067.5 Da PI: 8.7916

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT49843.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.1	1.7e-19	56	109	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ +e++ +LA++lgL+ qV vWFqNrRa++k+ PHT49843.1 56 KRKLSEEQVNLLERSFGDEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKN 109 45899***********************************************95 PP
2	HD-ZIP_I/II	112.5	2.8e-36	55	145	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv+lLE+sF e+kLe+erK +la+eLgl+p+qvavWFqnrRAR+k+k+lE++y++Lk ++++ e+ rLe+ev +++e+l PHT49843.1 55 RKRKLSEEQVNLLERSFGDEHKLETERKDKLASELGLDPHQVAVWFQNRRARWKNKKLEEEYSKLKIQHETTIIEKYRLETEVLKMKEQLC 145 8**************************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence
MTGRKVDDQM ILISHQFYPH IYVQLKQDLQ EETVKPRRRK NKKRDGNNNT SVVVRKRKLS 60 EEQVNLLERS FGDEHKLETE RKDKLASELG LDPHQVAVWF QNRRARWKNK KLEEEYSKLK 120 IQHETTIIEK YRLETEVLKM KEQLCQAEKQ IQRLLFERNC DISSNSPTSS IFSMEQPQFN 180 LGEFGMEGLL MDNNVFFVGD NQRTYATLCD N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	40	PRRRK
2	37	45	RRRKNKKRD
3	37	58	RRRKNKKRDGNNNTSVVVRKRK
4	38	59	RRRKNKKRDGNNNTSVVVRKRK
5	42	63	RRRKNKKRDGNNNTSVVVRKRK
6	55	84	RKRKLSEEQVNLLERSFGDEHKLETERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-53	HD-ZIP family protein