PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT49884.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 182aa    MW: 20754.2 Da    PI: 8.5911
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT49884.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.67.6e-0927591345
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgk 45
                + + ++ + K A  LSvLC++e  +iifs tg+
  PHT49884.1 27 YPNKQKALCKQAIDLSVLCGIEFMIIIFSITGE 59
                778999***********************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MARKSSMMQE RSDRKFLKKK QFEPIMYPNK QKALCKQAID LSVLCGIEFM IIIFSITGEP  60
FIFDKPDAES INRFLQAKQA TECSSSCRTT IEKFCDHKRP VKIDQKRKMI IDDRGKGINE  120
NIIPAELFPT YSAVEYHLGK KGLAQEFEFE LNAFVGNGVG GLVFVFVVDG CTLNEELRVV  180
KN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.19e-07M-type_MADS family protein